payroll and HR software comparison

Payroll and HR software for Australian employers, compared by fit and costed over three years

Work out what a payroll or HR system will really cost per employee, which type fits your awards, rosters and headcount, and what it must do now that super is paid every payday.

  • Software types and pricing models compared, with illustrative ranges only
  • STP Phase 2, Payday Super, payslips and award rules as they apply in 2026–27
  • Calculators for per-employee cost, renewal uplifts and award-automation payback

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Café manager checking a staff roster on a tablet at the counter before opening

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Tools

Payroll and HR software types compared

Software typeHow it is usually priced (illustrative)Best fit forWatch out for
Payroll inside cloud accounting software (e.g. the payroll features of Xero, MYOB or QuickBooks Online)Included in some accounting plans up to a set number of employees, then a per-employee add-onOwner-run businesses with a few staff on simple pay arrangementsLimited award interpretation and rostering; employee caps per plan; plan changes can move payroll to a higher tier
Standalone payroll softwarePer employee per month, sometimes with a minimum monthly feeBusinesses with a bookkeeper or payroll officer, 5–100 staff, one or two awardsHR features are thin; check super payment method, bank files and accounting integration
Payroll plus HR platform (HRIS), e.g. Employment Hero-type suitesPer employee per month in bundled tiers; annual contracts common20–300 staff wanting onboarding, documents, leave and self-service in one placeTier jumps for one needed feature; per-employee price applies to every active record
Workforce management (rostering, time and attendance, award interpretation), e.g. Deputy, Tanda or Humanforce-type toolsPer active user per month, plus time-clock hardware or kiosk devicesHospitality, retail, aged care, health and other shift-based, award-heavy workforcesAward configuration still needs checking; sync errors between roster, timesheet and payroll

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Frequently asked questions

What is the best payroll and HR software in Australia?

There is no single best product; there is a best fit for your headcount, awards, rosters and budget. A café group with many casuals on penalty rates needs strong award interpretation and rostering, while a 10-person consultancy on salaries may need little more than payroll inside its accounting software. Compare software types first, then test shortlisted products with your own timesheets. See the selection guide.

How much does payroll software cost per employee?

Most cloud payroll and HR software is priced per employee per month, sometimes with a base or minimum fee and paid add-ons. Illustrative bands run from about $5–$10 per employee a month for payroll only to $20–$40 for all-in HR platforms, but real prices depend on the tier and contract. Try the cost per employee estimator with your own quote.

Does my payroll software have to support Payday Super?

Since 1 July 2026, employers must pay super guarantee contributions with each payment of wages, and the contribution generally has to reach the employee's fund within 7 business days after pay day. Your payroll software needs to calculate super on qualifying earnings, report it through Single Touch Payroll and send payments every pay run. The ATO's Small Business Superannuation Clearing House closed on 1 July 2026. See the Payday Super guide.

Is STP Phase 2 still required?

Yes. Employers report each payment of salary or wages to the ATO through Single Touch Payroll on or before pay day, using STP Phase 2 reporting, which breaks gross pay into components such as allowances, overtime and leave. Payday Super has added qualifying earnings and super liability to what is reported. Small employers can use any STP-enabled software. See the STP Phase 2 guide.

If the software calculates award pay wrongly, who is responsible?

The employer. Software applies the award rules it is configured with, and a wrong setting can underpay every employee every pay run. Since 1 January 2025, intentional underpayment of wages can be a criminal offence, and civil penalties apply to underpayments generally. Test the configuration, review it after each annual wage review and keep evidence of your checks. See underpayment and payroll software.

When is the best time to switch payroll software?

The cleanest point is the start of a financial year (1 July), because year-to-date figures start from zero. Switching mid-year is common and workable, but year-to-date amounts and leave balances must be carried over accurately and STP reports from both systems need to reconcile. Run at least one parallel pay run before going live. See switching payroll software mid-year.

Do I pay GST on overseas HR software?

Overseas suppliers of digital services generally must charge Australian GST of 10% to customers who are not GST-registered. If your business is registered and you give the supplier your ABN and state that you are registered, the supplier generally should not charge GST. See USD-priced HR software, exchange rates and GST.

How this site is made

Pay Run Fit is an independent information project. Guides are drafted with the help of AI writing tools and checked against official and primary sources before publication; see our Editorial Policy. We are not affiliated with any provider mentioned on the site and do not sell products or services.